PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2544
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 325aa    MW: 35653.8 Da    PI: 6.2787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2544genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv+++k +G g+W++ ++  g++R++k+c++rw +yl
      Gh_D05G2544 14 KGPWTPEEDQKLVQYIKNHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding53.55.5e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
      Gh_D05G2544  67 RGKFSQDEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.718961IPR017930Myb domain
SuperFamilySSF466892.31E-3111108IPR009057Homeodomain-like
SMARTSM007171.7E-151363IPR001005SANT/Myb domain
PfamPF002497.5E-181461IPR001005SANT/Myb domain
CDDcd001671.42E-121661No hitNo description
PROSITE profilePS5129426.68862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2765117IPR009057Homeodomain-like
SMARTSM007173.7E-1666114IPR001005SANT/Myb domain
PfamPF002497.1E-1667112IPR001005SANT/Myb domain
CDDcd001674.11E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRSPCCDED GLKKGPWTPE EDQKLVQYIK NHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQDEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
IDPMTHQPRT DIFSSLPHLM VLASLRDLLE NPLQAEAAQL AKLQYLQFLL QSSAASMASN  180
DNYGGATTIG AEDMEGFNLL NSTQFSVGNN ETSQLLHYPP QQQVPFGLQT SFNNEKKTSS  240
NSDEMGHCSN FIVSQGDNLI DHSVAASCPL QSSPTSPPAT AGAADASVSN VPGDASSASS  300
YNAGAASPYW SDLYFDDSLM QDIIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30121165108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5783836e-69JX578383.1 Gossypium hirsutum clone NBRI_GE10395 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446706.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A0D2QPG00.0A0A0D2QPG0_G
STRINGPOPTR_0005s17080.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-100myb domain protein 93